PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0101540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 370aa    MW: 41522.1 Da    PI: 7.7418
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0101540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP145.83e-451112561135
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg. 88 
                      a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ ai+el+++     ss+s+++ +++++         + 
  Lj1g3v0101540.1 111 ATTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSESAIQELARSkncscSSNSNNNPSNNNK---------Sl 195
                      579**************************************************************555441112211112222.........13 PP

              TCP  89 ..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                     + +s+ k   +++++ ++l+ +kesr++arararert  km  +++
  Lj1g3v0101540.1 196 fgggdnhngtnsirGRGNSKLKWTTQRDQDVCVLQNKKESRERARARARERTFYKMLEDQR 256
                      3334444456777577777779**********************************88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-40112251IPR005333Transcription factor, TCP
PROSITE profilePS5136934.612114172IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.457233250IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFSSTSYHDS INPFPSSFPS SSYPSLPFLI DPENINNFPQ DPLVSHPFIH DSNINDAPIF  60
THDTTNLAVS VSHLLEQQDP LGGNNYASSI VPNFLRASKP AASASAAAAM ATTKKDRHSK  120
IHTSQGLRDR RVRLSSEIAR KFFDLQDMLE FDKPSNTLEW LFTKSESAIQ ELARSKNCSC  180
SSNSNNNPSN NNKSLFGGGD NHNGTNSIRG RGNSKLKWTT QRDQDVCVLQ NKKESRERAR  240
ARARERTFYK MLEDQRLPAN TTQIMHQLRS SSPIQLLQPY PHLMDNSEAV SGGGGGDGFN  300
VIEESIMIKR NMMSSNSHPH ENHHLAIPNK EAGFNNNYID YPLLQPYSTT PNWEIATMNM  360
NLSTCFMNQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235245RERARARARER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104410.0AP010441.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT32M13, TM1651, complete sequence.
GenBankDQ2024770.0DQ202477.1 Lotus corniculatus var. japonicus CYC3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606066.12e-89PREDICTED: transcription factor DICHOTOMA-like
TrEMBLQ1WK560.0Q1WK56_LOTJA; CYC3
STRINGGLYMA20G28670.12e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-23TCP family protein
Publications ? help Back to Top
  1. Feng X, et al.
    Control of petal shape and floral zygomorphy in Lotus japonicus.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 4970-5
    [PMID:16549774]